PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006196-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

LBD

Protein Properties

Length: 108aa MW: 11623.2 Da PI: 8.4891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006196-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.8	6.5e-37	15	91	1	77
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGav 77 +CaaCk+lrr+C ++C++a yfpae+p kf nvhk+FGasnv+kll+++p+++red+++sl+yeAear++dPvyG+v SMil_00006196-RA_Salv 15 PCAACKFLRRRCLSGCIFAAYFPAEEPTKFVNVHKIFGASNVSKLLNEIPPHQREDTVKSLAYEAEARLKDPVYGCV 91 7***************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.29	14	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-36	15	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MASSSSSSSS YSSPPCAACK FLRRRCLSGC IFAAYFPAEE PTKFVNVHKI FGASNVSKLL 60 NEIPPHQRED TVKSLAYEAE ARLKDPVYGC VWGPSPFLTP GLHPSAGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-45	15	91	11	87	LOB family transfactor Ramosa2.1
5ly0_B	8e-45	15	91	11	87	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR076528	2e-45	KR076528.1 Boehmeria nivea lateral organ boundaries domain protein (LBD2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597524.1	9e-50	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_011097516.1	6e-50	LOB domain-containing protein 25-like
Refseq	XP_016505823.1	9e-50	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018625398.1	9e-50	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_018625399.1	9e-50	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q9FML4	4e-45	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S4CXF4	2e-48	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	4e-49	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-44	LOB domain-containing protein 25

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]