PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006204-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HSF
Protein Properties Length: 290aa    MW: 31359.9 Da    PI: 5.9448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006204-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.7e-36261172102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ Fk+g
  SMil_00006204-RA_Salv  26 FLTKTYQLVDDPSIDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFKRG 104
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k ll++i+r+k 
  SMil_00006204-RA_Salv 105 EKVLLRDIQRRKI 117
                            **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5922115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-3823115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.98E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.5E-212649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-216476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.5E-217789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSGDGPGGAS GGSGGGESQR SVPTPFLTKT YQLVDDPSID DLISWNEDGT TFIVWRPAEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFANDC FKRGEKVLLR DIQRRKISTG  120
INAAAAPAAV AIQMSPANSG DEQVLSSNSS PAAATPPPLR ACTSTPEILE ENDRLRRENS  180
QLSQELNRLR SLCSNIYNLM SSYATNPGEA LVLMPEARAA AAGCAGGGGK AGDEEEEMCP  240
RLFGVSIGLK RLKRSENGNG GGGERMAKDV KSEPSDRGSS EDRDPRVHSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2721155129Heat shock factor protein 1
5d5v_B3e-2721155129Heat shock factor protein 1
5d5v_D3e-2721155129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846526.11e-125PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D32e-89HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A4D8YL331e-135A0A4D8YL33_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.A00803.1.p1e-125(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-85HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]