PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006319-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family GRAS
Protein Properties Length: 150aa    MW: 16797 Da    PI: 4.7941
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006319-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS55.41.2e-1734127199290
                   GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                            gEal++n++++lh+++ e+ + +    r+ +Lk+v++l++k vvvv+++ad+ s++++ r+  a +y    +d +e+ lp+es+++++
  SMil_00006319-RA_Salv  34 GEALIINFQMMLHYIPGETRANAPnsLRTIFLKAVRGLNSKAVVVVDEDADLMSGNLMSRLRAAYNYLGIPYDRVETFLPPESRQQQW 121
                            9***************9987765445899*********************************************************** PP

                   GRAS 285 vErell 290
                            ++++l 
  SMil_00006319-RA_Salv 122 YDQALA 127
                            *99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.781150IPR005202Transcription factor GRAS
PfamPF035144.2E-1534127IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEFKEILSSS SEGFSSLIEQ LRAIGTGTGT GAGGEALIIN FQMMLHYIPG ETRANAPNSL  60
RTIFLKAVRG LNSKAVVVVD EDADLMSGNL MSRLRAAYNY LGIPYDRVET FLPPESRQQQ  120
WYDQALASIT TLNHQDWKDI EEERRLKEAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063662.16e-40scarecrow-like protein 32
TrEMBLA0A022RWR12e-38A0A022RWR1_ERYGU; Uncharacterized protein (Fragment)
STRINGMigut.H00362.1.p2e-39(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67411.17e-25GRAS family protein