PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006337-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 389aa    MW: 42686.9 Da    PI: 10.2847
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006337-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.93.9e-27115169156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k +++WtpeLH++Fv+aveqL G +kA+P++ilelm+ ++Lt+++++SHLQkYR++
  SMil_00006337-RA_Salv 115 KVKVDWTPELHKQFVQAVEQL-GVDKAVPSKILELMGTDCLTRHNIASHLQKYRSH 169
                            5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.851112171IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-26113172IPR009057Homeodomain-like
SuperFamilySSF466893.94E-18114172IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-26115169IPR006447Myb domain, plants
PfamPF002498.3E-9118167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLTQNTQLDL EMDPKIHAQI SSRAGDESEM SSNATGLVQV DTIDEGKGNI FIKEEKAPAV  60
SASASATNHG SGSSIVQGEE TVSIREKLVA NLYPRKVDKG RKSSAHINNS SGKRKVKVDW  120
TPELHKQFVQ AVEQLGVDKA VPSKILELMG TDCLTRHNIA SHLQKYRSHR KHLLAREAEV  180
ATWSRKRQLY RTTGSTGKSD ANSWAVPATG FPPVTSVSRS RPFHVWGHPS PNQSLVYMWP  240
GYPASSPSPP AWGAGHSPAP PLTGDPSFWN CHHQDVPAQG MPCYPSHFPQ PSGTKHWCPC  300
RPDWTKTGST TNGLSPVSRE HRCSHWGRSI QAMAAAATWT QTPVHRQRRG GAATSRNIKD  360
TTNLRLSSLL PTPSCRVYSQ YSRSKISPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-16111167157ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847450.11e-120PREDICTED: probable transcription factor GLK1 isoform X3
SwissprotQ9SIV32e-54GLK1_ARATH; Transcription activator GLK1
TrEMBLA0A4D8Z8P20.0A0A4D8Z8P2_SALSN; Uncharacterized protein
STRINGMigut.M00145.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25322356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-54GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Leister D,Kleine T
    Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.
    Physiol Plant, 2016. 157(3): p. 297-309
    [PMID:26876646]
  2. Nagatoshi Y, et al.
    GOLDEN 2-LIKE transcription factors for chloroplast development affect ozone tolerance through the regulation of stomatal movement.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(15): p. 4218-23
    [PMID:27035938]
  3. Tokumaru M, et al.
    Ubiquitin-Proteasome Dependent Regulation of the GOLDEN2-LIKE 1 Transcription Factor in Response to Plastid Signals.
    Plant Physiol., 2017. 173(1): p. 524-535
    [PMID:27821720]
  4. Ni F, et al.
    Turnip Yellow Mosaic Virus P69 Interacts with and Suppresses GLK Transcription Factors to Cause Pale-Green Symptoms in Arabidopsis.
    Mol Plant, 2017. 10(5): p. 764-766
    [PMID:27964999]
  5. Wang H,Seo JK,Gao S,Cui X,Jin H
    Silencing of AtRAP, a target gene of a bacteria-induced small RNA, triggers antibacterial defense responses through activation of LSU2 and down-regulation of GLK1.
    New Phytol., 2017. 215(3): p. 1144-1155
    [PMID:28656601]