PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006423-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 382aa    MW: 42304.1 Da    PI: 8.4712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006423-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-12316361655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++ +L+el+P+     +k  + +++L +AveYIk Lq
  SMil_00006423-RA_Salv 316 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKALQ 361
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.742310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15313372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-11314363No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13315369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MYGDSHALSS DPSPIFPPNR KQKEEQQQLP LMESDYRQQL ACSQNSSGLL RFRSAPTSLL  60
ENFTDKGAKL GFSRFCSDEM DGVNAAAEND DVDDGKGSGN RFGGANSQLP PQYPRQSGAQ  120
LGYRGLTSIA RENQGLMRQN SSPAGLFSHL NSQNGYSGVR GVGSYRVGGD GDLSPSSNRF  180
KNHMNCSRVS PSSLSRISEF ESENALVDEA KVGNGSGDHS LIFSSGFPFA SWNDSSYFAE  240
NFNNSGIKRE LDCDPNLFVN NNERCETGNR PNILSHHLSL PKTSSEMAAM EKLMQLQDTV  300
PCKVRAKRGC ATHPRSIAER VRRTRISERM RKLQELVPNM DKQTNTSDML DLAVEYIKAL  360
QKQYKTLSDV RANCKCLAFQ KR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574780.0KP257478.1 Salvia miltiorrhiza clone 45 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075183.11e-153transcription factor bHLH130-like
SwissprotQ66GR31e-85BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A0H3Y8U70.0A0A0H3Y8U7_SALMI; Basic helix-loop-helix transcription factor
STRINGSolyc10g079050.1.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]