PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006434-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NAC

Protein Properties

Length: 327aa MW: 37087.8 Da PI: 7.2879

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006434-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.4	4.8e-52	5	130	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 pGfrFhPtdeelv +yL++k+ +++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t sg+Wkatg+d+ SMil_00006434-RA_Salv 5 PGFRFHPTDEELVGFYLTRKILHRPLSI-ELIKQIDIYKYDPWDLPKLATNGEKEWYFYCPRDRKYRNSTRPNRVTGSGFWKATGTDR 91 9*************************.89***********88888999****************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++s+ +++ +glkk+Lvfykg+a kg ktdW+mhe+rl SMil_00006434-RA_Salv 92 PIYSShTTKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRL 130 856667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.2	3	153	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-59	4	153	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEELPGFRFH PTDEELVGFY LTRKILHRPL SIELIKQIDI YKYDPWDLPK LATNGEKEWY 60 FYCPRDRKYR NSTRPNRVTG SGFWKATGTD RPIYSSHTTK CIGLKKSLVF YKGKAAKGIK 120 TDWMMHEFRL PSLSPSSTIP INESWAICRI FKKANSNTRR ALSLSHSWPN PILDTTESHI 180 INPLNNTPTM SSSLQFGFSN DFQHSSFSPP YFKPEDHAIS CIETTTPASR CHVVSDATSL 240 LLDMSTSILG GDFGADTAGL SASSFNGFLG TPEDLQRNLV EEAVNMGQVD EQWMEFPYGF 300 PPNLMWDSSS PYPSHLSTTY STNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	5	159	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	5	159	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	5	159	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	5	159	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	5	159	22	174	NAC domain-containing protein 19
3swm_B	3e-55	5	159	22	174	NAC domain-containing protein 19
3swm_C	3e-55	5	159	22	174	NAC domain-containing protein 19
3swm_D	3e-55	5	159	22	174	NAC domain-containing protein 19
3swp_A	3e-55	5	159	22	174	NAC domain-containing protein 19
3swp_B	3e-55	5	159	22	174	NAC domain-containing protein 19
3swp_C	3e-55	5	159	22	174	NAC domain-containing protein 19
3swp_D	3e-55	5	159	22	174	NAC domain-containing protein 19
4dul_A	3e-55	5	159	19	171	NAC domain-containing protein 19
4dul_B	3e-55	5	159	19	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071000.1	1e-126	putative NAC domain-containing protein 94
Swissprot	Q9FIW5	2e-90	NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBL	A0A2G9I2U7	1e-121	A0A2G9I2U7_9LAMI; Uncharacterized protein
STRING	VIT_01s0026g02360.t01	1e-122	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-90	NAC family protein