PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006537-RA_Salv
Common NameMYB11
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 168aa    MW: 19539.3 Da    PI: 9.2344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006537-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-16552148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+++Ede+l +++ ++G g+W+++a   g+ R +k+c++rw +yl
  SMil_00006537-RA_Salv  5 KGLWSPDEDERLRNYIVKHGHGCWTSVAINAGLQRNGKSCRLRWINYL 52
                           678*******************************************97 PP
2Myb_DNA-binding42.31.7e-1358103148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++  E++ +  ++k lG++ W+ Ia+++  gR+++++k++w++yl
  SMil_00006537-RA_Salv  58 RGAFSMAEEDTIFTLHKVLGNK-WSQIAQHLA-GRSDNEIKNYWHSYL 103
                            8999******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.74E-29199IPR009057Homeodomain-like
PROSITE profilePS5129426.349156IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-22255IPR009057Homeodomain-like
SMARTSM007176.7E-12454IPR001005SANT/Myb domain
PfamPF002491.1E-14552IPR001005SANT/Myb domain
CDDcd001671.82E-10852No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2356107IPR009057Homeodomain-like
PROSITE profilePS5129418.35657107IPR017930Myb domain
SMARTSM007173.5E-1257105IPR001005SANT/Myb domain
PfamPF002492.4E-1258103IPR001005SANT/Myb domain
CDDcd001673.18E-864103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGKRKGLWSP DEDERLRNYI VKHGHGCWTS VAINAGLQRN GKSCRLRWIN YLRPGLKRGA  60
FSMAEEDTIF TLHKVLGNKW SQIAQHLAGR SDNEIKNYWH SYLKKRVAKM EVDKSPNLSL  120
PKLFFADWLC LDQDLGHTSN LEDHTCLFDD IHIPIHHFPP QFNTFSQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2451077108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593650.0KF059365.1 Salvia miltiorrhiza MYB-related transcription factor (MYB11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353308.16e-67PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K42e-52LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A059PRI41e-124A0A059PRI4_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000370802e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-55myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]