PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006622-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 246aa MW: 27661.7 Da PI: 8.3366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006622-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.5e-08	18	74	4	40
HHHHHHHHHHHHHHHHHHHHHCTSCC.C......................TTS-STC CS HLH 4 ahnerErrRRdriNsafeeLrellPk.as...................kapskKlsK 40 +++E++RR+++++ +++L ++lP+ +s k+ ++Kl+K SMil_00006622-RA_Salv 18 ERKIIEKNRRNKMKNLYSQLVSHLPPqPSslvegaplpdqidqvvehiKNMKTKLEK 74 5689**********************6659988888888888888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.47E-8	13	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.099	14	68	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	16	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-5	19	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGKPCRIPSN ASTNPRIERK IIEKNRRNKM KNLYSQLVSH LPPQPSSLVE GAPLPDQIDQ 60 VVEHIKNMKT KLEKLRQKKD FLLQRNKQPI NNNSCITNTQ NEGKNLISSP LVEVQDMGPN 120 LDVVLAENLQ SFSSFRDIIS LVHQHGVEIA SASFSRDGNS SIQVLHDKVG HPKPGFDGAT 180 IARKMKELVC KGMNPSSSEV VESEMNLWDY GIDSNWGFEI PEVLLPGLQE FMVTMEKFKC 240 DNKISV

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257499	0.0	KP257499.1 Salvia miltiorrhiza clone 66 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100438.1	5e-77	uncharacterized protein LOC105178626 isoform X1
TrEMBL	A0A0H3YBT5	0.0	A0A0H3YBT5_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.M00292.1.p	7e-60	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-09	bHLH family protein