PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00006772-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

G2-like

Protein Properties

Length: 446aa MW: 49273.9 Da PI: 5.135

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00006772-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	223	277	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fv+av++LGGs++AtPk +l++m+v+gLt+++vkSHLQkYR+ SMil_00006772-RA_Salv 223 KARMRWTPELHEAFVDAVNKLGGSDRATPKGVLKIMNVEGLTIYNVKSHLQKYRT 277 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.577	220	280	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-18	221	277	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.3E-31	221	279	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-25	223	277	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	225	276	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	310	354	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
LSMAPSSFKK TYGGTQSANM EVSGTMVKSL HILPSPLEEK FTLLPDSPQV FSSDSRCPTR 60 IHYSPNGSGS ISSTIYSLSP KEGDSFMENQ HPYSVMQSSQ LDGLAMKNHD VSWNEIENFL 120 DTPLEVPDQD GQIETSMVAE DHAKKTNWQE WAEQLITAND ETLNSNWSDL LIDGNLPDSE 180 PKLLDLPHNA SSHQPQIQRL QPYHVPSVND CPALGSSTAP SSKARMRWTP ELHEAFVDAV 240 NKLGGSDRAT PKGVLKIMNV EGLTIYNVKS HLQKYRTARY KPESPEGTPE KKLKTASDMT 300 SLDLKATVGI TEALRLQMEV QKQLHDQLEI QRKLQIRIEE QGKRLQEMFE QQRKLEEVQG 360 KTSSSNAGRP QTPAKQTQPC SEDDKPESSQ NNTASVKEVA ADVCSSADED QSKKEMSSDN 420 SRAPCSPPSG LTKVSETGTL GSPHEL

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

LSMAPSSFKK TYGGTQSANM EVSGTMVKSL HILPSPLEEK FTLLPDSPQV FSSDSRCPTR  60
IHYSPNGSGS ISSTIYSLSP KEGDSFMENQ HPYSVMQSSQ LDGLAMKNHD VSWNEIENFL  120
DTPLEVPDQD GQIETSMVAE DHAKKTNWQE WAEQLITAND ETLNSNWSDL LIDGNLPDSE  180
PKLLDLPHNA SSHQPQIQRL QPYHVPSVND CPALGSSTAP SSKARMRWTP ELHEAFVDAV  240
NKLGGSDRAT PKGVLKIMNV EGLTIYNVKS HLQKYRTARY KPESPEGTPE KKLKTASDMT  300
SLDLKATVGI TEALRLQMEV QKQLHDQLEI QRKLQIRIEE QGKRLQEMFE QQRKLEEVQG  360
KTSSSNAGRP QTPAKQTQPC SEDDKPESSQ NNTASVKEVA ADVCSSADED QSKKEMSSDN  420
SRAPCSPPSG LTKVSETGTL GSPHEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-30	223	281	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077052.1	1e-155	protein PHR1-LIKE 1-like isoform X1
Refseq	XP_020548743.1	1e-155	protein PHR1-LIKE 1-like isoform X1
TrEMBL	A0A4D9A0Y4	0.0	A0A4D9A0Y4_SALSN; Uncharacterized protein
STRING	Migut.F02036.1.p	1e-121	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4582	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	2e-79	phosphate starvation response 1