PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006887-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24448.1 Da    PI: 10.0203
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006887-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.7e-171050242
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           +i n+s r+ tf kR++g+lKK +ELS+LC++e + i++s+
  SMil_00006887-RA_Salv 10 FIINDSARKATFKKRKKGLLKKVSELSTLCGIESCAIVYSP 50
                           789*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554559.68E-22185IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.792149IPR002100Transcription factor, MADS-box
CDDcd002662.78E-19285No hitNo description
PRINTSPR004047.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-171051IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTRKKVKLAF IINDSARKAT FKKRKKGLLK KVSELSTLCG IESCAIVYSP YESGPEVWPD  60
AGGAGRVVAQ FKRMPEMEQS KKMVNQESFI RQRVAKAAEQ LKKLHKDNRE KEVTHLMYHC  120
LAGKGLHGLP LPDLNDMAWL LDHNLKEIYK RIEGIKKQQQ RSLDAGGGGG GGGEGQQQQQ  180
WMGEQQQQQM GGGFGEEMIV PFSDGSSHAA AMWSNLFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIINDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088101.15e-99agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A2G9GXU42e-95A0A2G9GXU4_9LAMI; MADS box transcription factor
STRINGMigut.B00884.1.p4e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-52AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]