PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006890-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 772aa    MW: 83819.2 Da    PI: 6.7559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006890-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16489535455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  SMil_00006890-RA_Salv 489 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 535
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.98E-17479539No hitNo description
Gene3DG3DSA:4.10.280.101.9E-20482544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-20482546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349485534IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13489535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17491540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
LKIDTGKHPE KRLYLLGDVK FLADFIWSLY WWDFFQPWTF FNSIKLLEFQ RKFCFSTMPL  60
SEFLRMARGK LESGHQKPAP ADISSRPGNE LVELVWENGQ VVMQGQSSRA TRSPTLNNLL  120
SNTSKARDAA TTARYGKFGG VDSIMNDMVP VVPSGDIDLG QDDEIAPWLS YPIDDALGQD  180
YASEILPHIS SVTANGSPAQ NSFVSADKRS SCEQAVNNLQ TGASNVKVPS RSSSKDRLFG  240
SWLPQQHRQT SDALGSGVTD NSSDHLDSVF GNPGQSRDTV NGSASTVMDR RSIPPPANCS  300
NFLNFSHFSR PAALAKGSLS NSDGIPMSVS SVVERVETKD KANCSNPVKS IRIEQVKSMP  360
KDNDSHGSCT LPVVGSREQV IKEPLERADN LFKETSIKND KPLILSNNES SAKGAPDGER  420
IVEPMVASSS VGSGNSADRV SCEQTQHSKR KFCDIEESEC RSDDVETESV DAKKATCLRG  480
SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK ASMLDEAIEY LKTLQLQVQI  540
MSMSSGLCMP PPMMFPTGMQ HMHPAHVPHF QPMGVGVGMG MAFGMGMPDM NGGSSGCPMY  600
PVPPLQVPHF SSPMLGLANF QRMPGHNHPV FGHPGQAFPN PVTKPPFVPL APRPPVTSAM  660
GSGALRNGSN GEILSTSQIM KSGDPVTTTN SQSMCSAEAR SSVHNKSNQP TKEVVDQCAA  720
VQDNERATDA GSSAAHLSAT TTDINKEPGG VEVLAEWHSP VDDVFLCSPG RT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1493498ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575050.0KP257505.1 Salvia miltiorrhiza clone 72 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552005.10.0transcription factor PIF3 isoform X2
TrEMBLA0A0H3YC530.0A0A0H3YC53_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-61phytochrome interacting factor 3