PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006938-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ARR-B
Protein Properties Length: 428aa    MW: 48993.2 Da    PI: 6.7941
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006938-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.72e-21235283554
                G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                            +Wt+eLH++F++aveqL G+ +  Pk+ilelm+ +gLt+ +v+SHLQk R
  SMil_00006938-RA_Salv 235 EWTQELHAKFMNAVEQL-GEGRCFPKEILELMNEPGLTRMQVASHLQKCR 283
                            7****************.9*****************************98 PP
2Response_reg33.81.7e-12301302106
                            EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
           Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                            l+vd +++ + ++++ le  +y +v  a+ ++ a+ +l + ++D+++  i+ p+ +G++ll + ++ ++ +p++ + + ++   a +a
  SMil_00006938-RA_Salv  30 LLVD-HDAEALNIAKQLEMWQY-KVSCAELASPAIPMLANAKFDVVMANINSPDPHGFKLLLQ-HALNMCIPVVWMADDDNAFVAMRA 114
                            5665.55555567788999***.************************************9855.555689****************** PP

                            HHTTESEEEESS--HHH CS
           Response_reg  90 lkaGakdflsKpfdpee 106
                            l+ Ga  ++ Kp +p e
  SMil_00006938-RA_Salv 115 LENGAFLCIKKP-PPME 130
                            ************.5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-1524146IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-1626147No hitNo description
SMARTSM004480.00227135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011017.44828140IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-729132IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.44E-1030140No hitNo description
PROSITE profilePS512949.628225287IPR017930Myb domain
SuperFamilySSF466897.17E-15230283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-20231284IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-19234284IPR006447Myb domain, plants
PfamPF002499.0E-8235282IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MWELGNFWTE RINSAPVASI HAMMHEIHVL LVDHDAEALN IAKQLEMWQY KVSCAELASP  60
AIPMLANAKF DVVMANINSP DPHGFKLLLQ HALNMCIPVV WMADDDNAFV AMRALENGAF  120
LCIKKPPPME FLRSLWQHVM REKARMIRER DILVASNNLG SVRGIEFREV VHHRSENPNP  180
KPNPNSNPNP NMMMKNKGKF KTRSRGRYDD YDGEYDSDNN IMSQNGNVRR KMCTEWTQEL  240
HAKFMNAVEQ LGEGRCFPKE ILELMNEPGL TRMQVASHLQ KCRNDNWRSP EERKPTLQTS  300
HHSSPNCSNR TQSKPRRFGS MPLVNKPSIQ QETGQSSETL WEPNNGAKME NGSTMINNTP  360
HHYGSNPRHA SDEYFNFPDM DSLIHDFSGR QQEPEIDNPS PVQEVYQVDP AYNDDKNSGE  420
ASMKTKSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079700.11e-137two-component response regulator ARR14-like
TrEMBLA0A4D9BEQ91e-132A0A4D9BEQ9_SALSN; Two-component response regulator ARR-B family
STRINGMigut.D00936.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.28e-30response regulator 1