PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00006948-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family WRKY
Protein Properties Length: 224aa    MW: 24969.4 Da    PI: 6.5247
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00006948-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY322.5e-10190211223
                            --SS-EEEEEEE--TT-SS-EE CS
                   WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                            +Dg++WrKYGqKe+ gs++pr 
  SMil_00006948-RA_Salv 190 EDGFTWRKYGQKEILGSKYPRY 211
                            7*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-8188213IPR003657WRKY domain
SuperFamilySSF1182901.29E-7188212IPR003657WRKY domain
SMARTSM007744.6E-4189221IPR003657WRKY domain
PROSITE profilePS508119.397190213IPR003657WRKY domain
PfamPF031061.5E-7190214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEEDLILYGC KLAKEMEQNL PMLANQPEAL LASCEEIITI FNNVKERLIV SQGNMMSFHG  60
RGGAGIQEWL RTASGSLTPA TSATTSVARE PMDLLSAQAM LRDPSNFHDG AKMKGLLEQQ  120
QSSSGLDFML GGERDISRVG AIDEVHPKTN APDFIKTSPP RHQRRRKEEG GKYVTTVAAP  180
QMGNLDIPPE DGFTWRKYGQ KEILGSKYPR YIFIYQFSQS PNLF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM8231680.0KM823168.1 Salvia miltiorrhiza WRKY protein (WRKY45) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D5YA181e-153A0A0D5YA18_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-24WRKY DNA-binding protein 55