PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007000-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bZIP
Protein Properties Length: 244aa    MW: 26697.9 Da    PI: 4.5241
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007000-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.71.2e-13125176455
                            XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                            l++ + +++NRe+ArrsR+RK++ +eeL   v+eL  +N++    l   +++
  SMil_00007000-RA_Salv 125 LRKRKWMISNRESARRSRLRKQKHMEELMAQVAELRRQNHQILTSLRATTQH 176
                            7788889*********************************988776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-10115171No hitNo description
SMARTSM003387.8E-16122186IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289124170IPR004827Basic-leucine zipper domain
PfamPF001702.6E-11125170IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-10126176No hitNo description
CDDcd147021.66E-18127177No hitNo description
PROSITE patternPS000360129144IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MQELKRKTIA EIRLYAGDFT ALLLLPSGES DFSGGRDSSG ESDFSGEQDS SGENGSSGEY  60
DSSGDDGPSG EYDSSGEDGS SGECASSGED DSSSEYDSFD EICLAAPRDS TDSASKEDLQ  120
KTMDLRKRKW MISNRESARR SRLRKQKHME ELMAQVAELR RQNHQILTSL RATTQHHIAV  180
ESENAASDLG FPQQNPLAPP PEFNPLLDHS SADQAQSPLP PPPQLVLRHH VVVFRRSRAA  240
VDQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125146RKRKWMISNRESARRSRLRKQK
2138144RRSRLRK
3138145RRSRLRKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.28e-22basic leucine-zipper 44