PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007035-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27310.2 Da    PI: 10.0968
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007035-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.44.3e-1260863056
                           HHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox 30 reeLAkklgLterqVkvWFqNrRakek 56
                              LAk+l+L  rqV vWFqNrRa+ k
  SMil_00007035-RA_Salv 60 YCALAKQLNLRPRQVEVWFQNRRARTK 86
                           568**********************98 PP
2HD-ZIP_I/II92.74.2e-30581212791
            HD-ZIP_I/II  27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                            +   +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l
  SMil_00007035-RA_Salv  58 DPYCALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVNELR-AL 121
                            55678********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.6E-43292IPR001356Homeobox domain
CDDcd000861.18E-75589No hitNo description
SuperFamilySSF466894.28E-115597IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-115586IPR009057Homeodomain-like
PfamPF000461.8E-96086IPR001356Homeobox domain
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PROSITE profilePS5007111.9366388IPR001356Homeobox domain
PfamPF021833.9E-1188122IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-2588131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSIKGWQWAG SGPDPAWSRS RSVFLCLDPD PVQIHWIQKN EIQTQIHEIH WISGPDPDPY  60
CALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLRRC CENLTEENRR LQKEVNELRA  120
LKLSPQLYMN MSPPTTLTMC PQCERVAVSS SSTLRLRVLC SAHVETGDFT LLCSAADRRW  180
GRPALQQTGG GRRPEVGKAG GADTGGWVSR AIGAWRIGER RRWDGRSRVS NLKWNFKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRARTKLKQ
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-50homeobox-leucine zipper protein 4