PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007103-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family Trihelix
Protein Properties Length: 290aa    MW: 32502.8 Da    PI: 9.1845
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007103-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.12.4e-1827111280
               trihelix   2 WtkqevlaLiearr........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                            W  qe+++Liea++        +++++ +rgk ++ +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++++ ++ s ++
  SMil_00007103-RA_Salv  27 WNLQETMVLIEAKKmdderrmkRVGDSTERGKPAELRWKWVEDYCWSHGCFRSQNQCNDKWDNLMRDFKKVREFERRGA-DK-SYWR 111
                            *************9544433333333333578********************************************984.33.3454 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9341991IPR017877Myb-like domain
PfamPF138372.6E-1126113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDLTIAKEGG LGSGSVSAQR DYRKGNWNLQ ETMVLIEAKK MDDERRMKRV GDSTERGKPA  60
ELRWKWVEDY CWSHGCFRSQ NQCNDKWDNL MRDFKKVREF ERRGADKSYW RMDKPERKDN  120
NLPSNMLPQI YEALLAVVDR KAPPPPPPFL PQCPILPPPA ILPPPPTSAH PLPTVDSDTS  180
EYSGSPAKRR KRRGGGGEGT SGVAAATTLQ EVGSAISKSA SIIAEAIQSC EDREEERHKE  240
MVNLHKRRLQ IEETKAEMNR QGINGLVDAI NKLANSMLAL AGHTTQPSSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096762.11e-125trihelix transcription factor ASR3 isoform X1
TrEMBLA0A2G9HYY01e-129A0A2G9HYY0_9LAMI; Transcription factor GT-2
STRINGGorai.009G150000.11e-116(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48212236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-57Trihelix family protein