PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007150-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 239aa    MW: 27423.7 Da    PI: 10.7021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007150-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-141663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W +eEd +l+++v+ +G g W++++++ g+ R +k+c++rw +yl
  SMil_00007150-RA_Salv 16 KGFWKPEEDMILKKYVESHGEGKWSLVSKKTGLMRGGKSCRLRWKNYL 63
                           688*******************************************97 PP
2Myb_DNA-binding50.26e-1669114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  SMil_00007150-RA_Salv  69 RGIMSQDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 114
                            67789*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-21965IPR009057Homeodomain-like
PROSITE profilePS5129422.9811167IPR017930Myb domain
SuperFamilySSF466896.25E-2814110IPR009057Homeodomain-like
SMARTSM007179.1E-121565IPR001005SANT/Myb domain
PfamPF002498.0E-131763IPR001005SANT/Myb domain
CDDcd001672.26E-101963No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2266117IPR009057Homeodomain-like
PROSITE profilePS5129417.95668118IPR017930Myb domain
SMARTSM007174.1E-1568116IPR001005SANT/Myb domain
PfamPF002495.0E-1470114IPR001005SANT/Myb domain
CDDcd001673.78E-1172114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEGKEEEEVK KGSLRKGFWK PEEDMILKKY VESHGEGKWS LVSKKTGLMR GGKSCRLRWK  60
NYLRPNIKRG IMSQDEKDLI IRLHKLLGNR WSLIAGRLPG RTDNEVKNYW NTHLNKRPSR  120
AQIHEPPPPP TVIEAAPPIA KIEGGNAENT KQISLLALLD ARRSTLDAFA SLDSSQLLDT  180
RCSRRRAIVQ FELFLVLLDS SMLDARRLRL ARQFSVARHL DAQHLSARRF SVEQCANYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24131174107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593560.0KF059356.1 Salvia miltiorrhiza MYB-related transcription factor (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549563.12e-66transcription factor MYB82
SwissprotQ9LTF74e-62MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A059PRN71e-104A0A059PRN7_SALMI; MYB-related transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.14e-63myb domain protein 82