PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007166-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 261aa    MW: 29933.1 Da    PI: 6.0556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007166-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.8e-14102147454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             h+ +Er+RR++i ++f+ L  l+P +     kK++Ka+iLe A+eY+k L
  SMil_00007166-RA_Salv 102 DHSLAERKRREKIGKRFAALSALVPGL-----KKMDKASILEDAIEYMKLL 147
                            699************************.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1797164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.68598147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-19102160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-12102147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-13103152No hitNo description
SMARTSM003531.9E-14104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEISGFRNLA DLVNQHVNDA LPVDFQSSFY EGLSHNFEQA CEYDDRPLKQ FRTSSHTPAT  60
TLQFDVIPTC DGVVWMNPKD EALVASKPIP FHQHHSHNKL ADHSLAERKR REKIGKRFAA  120
LSALVPGLKK MDKASILEDA IEYMKLLEEK VKGLEEKARK RSMESAVVFT INKDDEDEDD  180
FPIIRARFYD KEMLISIHCK RGRRVFEKIV GEIENLQFSI VNSSLMTYGD SSLSITLIAL  240
AQQKNDEEDS MSMEQLVRNL R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111ERKRRE
2107112RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575080.0KP257508.1 Salvia miltiorrhiza clone 75 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088147.18e-52transcription factor bHLH18-like
TrEMBLA0A0H3Y8W90.0A0A0H3Y8W9_SALMI; Basic helix-loop-helix transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-31bHLH family protein