PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007184-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 226aa    MW: 25145.5 Da    PI: 5.4109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007184-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.1e-1369113553
                            HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                            h   Er RR+++++ f++L  llP+ +     +K +K++i+ +Av+YIk 
  SMil_00007184-RA_Salv  69 HILTERERRKKMRDMFSNLHALLPHiP-----PKADKSTIVDEAVKYIKR 113
                            8889*********************88.....8***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.66264114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1467136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1069113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-1169118No hitNo description
Gene3DG3DSA:4.10.280.105.1E-1569137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-870120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.78E-4154186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGEEVEREGL WDDDQSWEFP KLATVEEDCG IKSADSDGQV AVKDNGSPPT PPEKGKKRSA  60
AAGGESELHI LTERERRKKM RDMFSNLHAL LPHIPPKADK STIVDEAVKY IKRVEQSVLE  120
LEKRKQSLMT QNQDLKTWNC GNVVLNVCGA DAHISVCSIR KPGLLAALCF TMERNNLEVV  180
SAQVSSCIYI IHARPAYGGS DQFQQAFAIE ENFKQAAAEI TMWLNS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575090.0KP257509.1 Salvia miltiorrhiza clone 76 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088239.15e-73transcription factor bHLH95-like isoform X1
TrEMBLA0A0H3YBU11e-169A0A0H3YBU1_SALMI; Basic helix-loop-helix transcription factor
STRINGGSMUA_Achr9P08780_0013e-56(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-24bHLH family protein