PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007185-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 136aa    MW: 15326.3 Da    PI: 6.8068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007185-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.8e-086496538
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.S CS
                    HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.l 38
                           h   Er RR+++++ f++L  llP+ +   p++K +
  SMil_00007185-RA_Salv 64 HILTERERRKKMRDMFSNLHALLPHiP---PKRKeM 96
                           8889*********************99...777755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.78E-76294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-66492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-56497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.06E-56494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MLAMGEELGG EGLLWDDDQS WEFPKLAKSA DISNLGGQRI KEAPPPPEKG KKRSAAARGE  60
SELHILTERE RRKKMRDMFS NLHALLPHIP PKRKEMSEER ETLEGVTPGD EVRSDCQRGT  120
DKERLRLRLP SGGAQE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575100.0KP257510.1 Salvia miltiorrhiza clone 77 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088239.15e-21transcription factor bHLH95-like isoform X1
TrEMBLA0A0H3YC553e-92A0A0H3YC55_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_010529068.16e-15(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-12bHLH family protein