PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007568-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

TCP

Protein Properties

Length: 124aa MW: 14474.4 Da PI: 8.1989

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007568-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	75.4	1.6e-23	2	94	15	98
TCP 15 vggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssgkaaksaa 95 +g dRR+Rls+++ +fF Lqd+LG+dk k i WL+ ++k+ ikel+++ s++ ++c a+++ ++s+ ++ a+++aa SMil_00007568-RA_Salv 2 QGVQDRRMRLSLQVENKFFNLQDMLGYDKVRKMIKWLFSKSKKDIKELAKNvvsgikenySNNEVNKCLAAEEDGNESSLVEKYAREQAA 91 7999***********************************************999888665444446773333333333222222222222 PP TCP 96 ksk 98 +++ SMil_00007568-RA_Salv 92 ETS 94 111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.334	1	49	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.5E-21	2	97	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MQGVQDRRMR LSLQVENKFF NLQDMLGYDK VRKMIKWLFS KSKKDIKELA KNVVSGIKEN 60 YSNNEVNKCL AAEEDGNESS LVEKYAREQA AETSLQTKHE RVEGEGEGRG MIDVEQRIRR 120 WETC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071262.2	3e-19	transcription factor TCP12
TrEMBL	Q6Y9Y6	5e-21	Q6Y9Y6_PLAMJ; TCP protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2436	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-19	TCP domain protein 12