PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007655-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 238aa    MW: 26448.3 Da    PI: 7.5035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007655-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012133151119
                            EEETTTTEEESSHHHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                            ykC++C+k F++   L  H
  SMil_00007655-RA_Salv 133 YKCEKCNKLFKSYQALGGH 151
                            9**********98877655 PP
2zf-C2H212.40.00047184206123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp C+++F +   L  H r+H
  SMil_00007655-RA_Salv 184 HECPFCDRVFASGQALGGHKRSH 206
                            79*****************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-5326IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494431IPR007087Zinc finger, C2H2
SMARTSM003550.77426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.89E-8133206No hitNo description
PROSITE profilePS501578.6133160IPR007087Zinc finger, C2H2
PfamPF139124.4E-9133157IPR007087Zinc finger, C2H2
SMARTSM0035540133153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-4181206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.0E-11183206IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494184206IPR007087Zinc finger, C2H2
SMARTSM003550.023184206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MERHRCKVCF RNFGDGRALG GHMRSHSMNS SKQVEETHSC SSSRGEVVEN REDGETAPSS  60
KIRAREITNY EERSPLSSVS DTATEEDVAR CLMMLSRDRW ERRNENDDDD DDDEDSGHLR  120
KAKGAKVVIR GKYKCEKCNK LFKSYQALGG HRASYNKKIK TDVAARFSSG PAAAAAAAVE  180
EKVHECPFCD RVFASGQALG GHKRSHFRGA SSVRIISRIG ENLDIDLNLP APVDDGEQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843926.12e-58PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A4D9AC141e-59A0A4D9AC14_SALSN; Uncharacterized protein
STRINGMigut.B01588.1.p4e-58(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-47C2H2-like zinc finger protein