PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007657-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 342aa MW: 36928.6 Da PI: 8.1079

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007657-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00075	35	52	38	55
STCHHHHHHHHHHHHHHH CS HLH 38 lsKaeiLekAveYIksLq 55 +Ka++L ++++Y+k+Lq SMil_00007657-RA_Salv 35 TDKASMLDEVIDYMKQLQ 52 79***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-4	34	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MPSLISGGAT AVGNFHRSAT AGVGQDITEG KMPSTDKASM LDEVIDYMKQ LQAQVHMISR 60 MNLPSMMMPL AMQQQFQMSM MNPAMGMGMA MPMPMPMHGM GVMDINAIGR ATGMPPMMPQ 120 PAAAAAFMPM PSWDVQPPPL TPDFLSNFFA TQSQSINNGG CNGGIEPGLS HPPALPNPGV 180 MEREQAGAPE RQPSRGGSSV RKTRYAPVVL SVWRVVPKDE TASSRRCVWM HGVAVLFIGT 240 VHLWRIPSNN DGSYQVTPTR PIMTVVMTAV TLQLRCNFLP SNNDGSNSGS YIVTPSRSIM 300 TFNNDGSYGG VEASSWETNG SSRRVEPLVH VWAQMIGPRS LD

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MPSLISGGAT AVGNFHRSAT AGVGQDITEG KMPSTDKASM LDEVIDYMKQ LQAQVHMISR  60
MNLPSMMMPL AMQQQFQMSM MNPAMGMGMA MPMPMPMHGM GVMDINAIGR ATGMPPMMPQ  120
PAAAAAFMPM PSWDVQPPPL TPDFLSNFFA TQSQSINNGG CNGGIEPGLS HPPALPNPGV  180
MEREQAGAPE RQPSRGGSSV RKTRYAPVVL SVWRVVPKDE TASSRRCVWM HGVAVLFIGT  240
VHLWRIPSNN DGSYQVTPTR PIMTVVMTAV TLQLRCNFLP SNNDGSNSGS YIVTPSRSIM  300
TFNNDGSYGG VEASSWETNG SSRRVEPLVH VWAQMIGPRS LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-10	bHLH family protein