PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007696-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 323aa MW: 36008.1 Da PI: 6.408

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007696-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	43	92	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L SMil_00007696-RA_Salv 43 RRVQKADREKLRRDRLNEQFMELGNALDPD----RPKNDKASILSDTIQMLKDL 92 799999*******************997....79**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.64E-14	42	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.522	42	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-12	42	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-8	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-8	43	97	No hit	No description
SMART	SM00353	4.4E-8	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDQLNPNSLF LPAPDACVPP TGPTRPNPDC RMEPETKDTV SARRVQKADR EKLRRDRLNE 60 QFMELGNALD PDRPKNDKAS ILSDTIQMLK DLTAQVEKLK SEYAALTDES RELTQEKNDL 120 REEKASLKSD IENLNGQYLQ RVRAMYPWAG MDHSVVMHPS SYPFPMPVPV PTGPIPLHPS 180 LQPYPFYGNQ NPAVVPNPCS TYVPYMTHNP MIEQQSTQHV SQVMQQGTRP HASTKQDPRN 240 KSSDVESRIE KSDDSNDITT DLELKTPGST SEQDSSSKQR RAKRVVRKET SVTDGTSSSG 300 CSSSHSMQAI SSNSIAGGKR TDD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257516	0.0	KP257516.1 Salvia miltiorrhiza clone 83 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092862.1	0.0	transcription factor bHLH121
Swissprot	Q9LT23	6e-93	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0H3Y7L3	0.0	A0A0H3Y7L3_SALMI; BHLH transcription factor 10
STRING	Migut.N01282.1.p	1e-146	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-88	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]