PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007824-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 172aa    MW: 18839.2 Da    PI: 9.2675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007824-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.51.5e-183885148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
  SMil_00007824-RA_Salv 38 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 85
                           79******************************************9996 PP
2Myb_DNA-binding26.11.9e-0891119130
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                            +g++T+eE+ +++++++++G++ W++ a++
  SMil_00007824-RA_Salv  91 KGAFTPEEERRIIELHAKMGNK-WARMAAE 119
                            799*******************.***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.7713389IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-243588IPR009057Homeodomain-like
SMARTSM007171.7E-133787IPR001005SANT/Myb domain
PfamPF002497.0E-163885IPR001005SANT/Myb domain
SuperFamilySSF466893.27E-2539115IPR009057Homeodomain-like
CDDcd001671.69E-114085No hitNo description
Gene3DG3DSA:1.10.10.608.5E-1589121IPR009057Homeodomain-like
SMARTSM007170.1490156IPR001005SANT/Myb domain
PROSITE profilePS512948.17290142IPR017930Myb domain
PfamPF002491.9E-791120IPR001005SANT/Myb domain
CDDcd001670.0013793120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRMSSESDER TKPNSGVDSP SVDDGIEGNV GGNGPLKKGP WTSAEDAILV EYVTKHGEGN  60
WNAVQKHSGL ARCGKSCRLR WANHLRPDLK KGAFTPEEER RIIELHAKMG NKWARMAAEF  120
MSHADASSTA ASAWRSSNPL KTASEAAPQF IKQIRTPQLT EAIEAVARNL FP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-213313722123MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0594320.0KF059432.1 Salvia miltiorrhiza MYB-related transcription factor (MYB78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080497.11e-67transcription factor GAMYB-like isoform X1
RefseqXP_011080498.19e-68transcription factor GAMYB-like isoform X2
RefseqXP_011080499.19e-68transcription factor GAMYB-like isoform X2
RefseqXP_020549969.19e-68transcription factor GAMYB-like isoform X2
SwissprotA2WW874e-54GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A059PSR65e-80A0A059PSR6_SALMI; MYB-related transcription factor
STRINGMigut.N02411.1.p2e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-48myb domain protein 101