PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00007855-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

FAR1

Protein Properties

Length: 255aa MW: 29384.3 Da PI: 7.7451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00007855-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.9	1.2e-11	58	123	31	90
FAR1 31 rtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+ +eg + ++kk+ ++k rr++++tr gCka+++ ++++dg+++ t++++ HnH+l+ SMil_00007855-RA_Salv 58 YEFYSIREGVKPDSKKDilessvQKKIRRRKPSTRNGCKARITTTLNDDGNYVFTSFSELHNHSLV 123 7899999*99999999999999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-9	58	123	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MLEFCCTNSQ ANEAVKMAVS DDVNNHVDFR RPHSYLPICE DSKKPYVGKV FKTLDEAYEF 60 YSIREGVKPD SKKDILESSV QKKIRRRKPS TRNGCKARIT TTLNDDGNYV FTSFSELHNH 120 SLVTEDVRHL MKFNRKMDES HQMIMLKCAK SNIGPVRAFR IFKELVGSFE EVGCTSKDFK 180 NLSYTMNSYA DGVDAQLLLD RFLSKRETDE CFKCEYLVDE THKVKSLFWS DAVAVQNYSL 240 FGDAVSFDAT YTTNR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-23	FAR1-related sequence 5