PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007899-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 604aa    MW: 67395.4 Da    PI: 7.1718
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007899-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.14.3e-1164131290
                   FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                            fY++YA+++GFs r+   ++       t+r+f Cs+ g +++  ++              C a+l+++ + ++kw+vtk++++H+H++
  SMil_00007899-RA_Salv  64 FYEDYARTLGFSARVCFDRS-------TSREFLCSRDGLKKRAGES--------------CGAMLRIEPRGQSKWVVTKFVKDHSHTI 130
                            9*************997555.......489*********9998877..............**************************98 PP

                   FAR1  90 a 90 
                            +
  SMil_00007899-RA_Salv 131 V 131
                            6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-764131IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.053279315IPR007527Zinc finger, SWIM-type
PfamPF044348.9E-11279313IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-8290317IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDARLVGIKE GNMDQHGGLA DDGDDDSNSS GEMDASGHSL VEDGIFAEPY VGMEFNSENA  60
AKMFYEDYAR TLGFSARVCF DRSTSREFLC SRDGLKKRAG ESCGAMLRIE PRGQSKWVVT  120
KFVKDHSHTI VSRSKLRCLR PKRHFAATTN SAAETFQDVD LVPSGIMYVS VDGNDVSSEI  180
NHVGKNMNAS GINHTYERAL ENSFEREVEA DFDTVCTTPV LKTPSPMENQ AASLYTKRIF  240
SKFQEELVET FVYTANRIDG DGNSSTFRVA KFEDVTKVYF VKLNIVEMKA NCSCKMFEYS  300
GILCRHVLTV FTVTNVLTLP SHYILKRWTR NAKSIIVADE HFEHQGHESL TTRYNNLCKE  360
AIRFAEEGAI SLETYKASLL SLREGGKKVA GVKKSVAKTA PSSAQVGGVT YDDRRTSTAN  420
LEMTPLLWPH QDEIIRRFNL NDTGVPSLSD LSIPRMAPVS LNRDGGHSDN MMILPCLKSM  480
TWVMENKNST PANKVAVINL KLQDYAKTPV GESEVKFSLS RVTLEPMLRS MAYISEQLST  540
PANKVAVINL KLQDTETTSG ESEVKFQVSR DTLGAMLRSM AYIREQLSNA IEPKQDNLTK  600
RPRK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090244.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090246.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_011090247.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_020552429.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1R3HB080.0A0A1R3HB08_COCAP; Uncharacterized protein
STRINGMigut.N02416.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-172FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]