PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007940-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family TCP
Protein Properties Length: 288aa    MW: 32555.4 Da    PI: 8.9616
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007940-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.31.2e-29391453108
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgk 89 
                            g+kdrhsk++T +g+RdRR+Rls+++a +++dLq++LG+ ++sk ++WLl + k+ i++l+ ++ ++  ++ +++++s s+s s+   
  SMil_00007940-RA_Salv  39 GGKDRHSKVCTVRGLRDRRIRLSIPTAVQLYDLQEKLGLSQPSKVVDWLLDATKADIDKLPPLPIIPGIFSpNPNQDSPSSSLSQF-L 125
                            79*************************************************************66666444423333222221111.1 PP

                    TCP  90 aaksaa.kskksqksaasal 108
                            a+k+a+ k+++++++ +s++
  SMil_00007940-RA_Salv 126 ASKQAMiKTHDDERERESTQ 145
                            22222223333333333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.3334098IPR017887Transcription factor TCP subgroup
PfamPF036348.7E-2740144IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNSRERVKQE GSPKLPPARS QWSSSHKNPR IVRVSRSFGG KDRHSKVCTV RGLRDRRIRL  60
SIPTAVQLYD LQEKLGLSQP SKVVDWLLDA TKADIDKLPP LPIIPGIFSP NPNQDSPSSS  120
LSQFLASKQA MIKTHDDERE RESTQKWIQD QNHDEEGFGG FVAQNFFPLG NVVNHQSHFP  180
NFHHNPYFHW DHPNLSLSHQ FGPNYNPPLP NQGQGADPNS HLYFYPNTAP TIPPFPSYLP  240
PSMENVQQNL GFSTALHLMT SPMRPFPLNV ASKPAHEDHA GRSETKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-174599155Putative transcription factor PCF6
5zkt_B3e-174599155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087359.14e-81transcription factor TCP5
TrEMBLA0A4D8ZGT51e-129A0A4D8ZGT5_SALSN; Uncharacterized protein
STRINGMigut.D01635.1.p3e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5