PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00007980-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 284aa    MW: 31273.8 Da    PI: 5.0195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00007980-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102072471055
                            HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  SMil_00007980-RA_Salv 207 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 247
                            9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-14197262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.224197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-12206251No hitNo description
PfamPF000108.0E-8207247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESVGTMCEG EWSSSFNGMC SDEADFMAQL LGSCSVPVSS FWAANDETNM FSFSLGNNSF  60
IFPSLSSNTT TLMPMDYSLM DANATTLMEG EDDFLNHDHS DASDNKLLQE SSLITTHISK  120
KRPQIPTGSQ RSKRFKKCAD ENDDANNANG SNVVLHRQSS SSGCCSEDES NGVKSSSSSR  180
RSGAQDVKGK ARASRGSATD PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV  240
QYVKFLQLQI KLLSSDDLWM YSPIAYNGMD LGLDLKIPSP KPQL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575210.0KP257521.1 Salvia miltiorrhiza clone 88 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836777.14e-91PREDICTED: transcription factor bHLH54-like
SwissprotQ7XHI93e-66BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A0H3Y7L50.0A0A0H3Y7L5_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.B00443.1.p3e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-47bHLH family protein