PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008029-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

Trihelix

Protein Properties

Length: 118aa MW: 12660 Da PI: 7.9632

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008029-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.7	1.6e-09	4	59	20	72
trihelix 20 rlrr.gklkkplWeevskkm.rergferspkqCkekwenlnkryk.kikegekkrt 72 r+++ g +++ W+e+++km + +g +rs ++C+ekw+ + +y k+++ +k+++ SMil_00008029-RA_Salv 4 RFQEnGMSEESVWDEIAAKMaACGGGNRSGVMCREKWDHVISDYLiKCNKKRKEGN 59 66653678999*******667888***********99999745666665553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-8	2	58	No hit	No description
PROSITE profile	PS50090	6.237	6	44	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MDLRFQENGM SEESVWDEIA AKMAACGGGN RSGVMCREKW DHVISDYLIK CNKKRKEGNA 60 KGGGCTYSYD PISDHGVAGG GGAVRLHGHG NSPRNGGSAA AANDGLFRYF IGDSYQRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094408.1	6e-26	trihelix transcription factor PTL
TrEMBL	A0A4D8YT62	2e-23	A0A4D8YT62_SALSN; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-08	Trihelix family protein