PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008070-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

NF-YB

Protein Properties

Length: 176aa MW: 19203.6 Da PI: 6.5387

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008070-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.6	9.9e-55	20	113	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 vre+drflPian++rimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfe+y++plkvyl+ SMil_00008070-RA_Salv 20 VREHDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEEYIAPLKVYLA 107 589*********************************************************************************** PP NF-YB 89 kyrele 94 +yre + SMil_00008070-RA_Salv 108 RYREGD 113 *965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.4E-51	17	120	IPR009072	Histone-fold
SuperFamily	SSF47113	1.3E-37	24	116	IPR009072	Histone-fold
Pfam	PF00808	1.2E-28	26	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	8.2E-20	54	72	No hit	No description
PROSITE pattern	PS00685	0	57	73	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	8.2E-20	73	91	No hit	No description
PRINTS	PR00615	8.2E-20	92	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MADSPGGADG GGDQSPPSNV REHDRFLPIA NIGRIMKKAL PANGKIAKDA KDTVQECVSE 60 FISFITSEAS DKCQKEKRKT VNGDDLLWAM ATLGFEEYIA PLKVYLARYR EGDAKGPARG 120 ADGLSAKKEM TGPQLGSDAQ SRTQFGWLSH EAKSRDELFI SGYSGQFKLV DVREIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-45	20	111	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-45	20	111	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077038.1	6e-78	nuclear transcription factor Y subunit B-1
Refseq	XP_020548913.1	6e-78	nuclear transcription factor Y subunit B-1
Swissprot	Q8VYK4	2e-65	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A0N6X6V5	7e-76	A0A0N6X6V5_SALMI; Transcription factor NFYB
STRING	VIT_13s0019g03600.t01	4e-73	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	2e-64	nuclear factor Y, subunit B1

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]