PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SMil_00008195-RA_Salv

Organism

Salvia miltiorrhiza

Taxonomic ID

226208

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia

Family

bHLH

Protein Properties

Length: 244aa MW: 27037.5 Da PI: 6.949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SMil_00008195-RA_Salv	genome	NDCTCM	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	14	45	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 f++Lre++P++ +K +Ka+ L +++eYI+ Lq SMil_00008195-RA_Salv 14 FQRLREIIPNS----EQKRDKASFLLEVIEYIQFLQ 45 9*******8....7*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-12	13	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-9	14	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-6	14	48	No hit	No description
Pfam	PF00010	8.7E-6	14	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MICHLRYWMA LANFQRLREI IPNSEQKRDK ASFLLEVIEY IQFLQEKVNR YDSSYNIWNH 60 EPAKMMQWDS APASVFGKKF DESKAAVSPS LPISGQNLVD SDLSTATTLR ERVDTSIPAS 120 PISPKQASDL EKAMTWPPSQ LRSCTTDTKM TEHELTIESG TINISSVYSQ GLLNTLTQAL 180 QSSGVDLSQA SISVQIDLGK KANGVTHSST FISKEDEVDT TLPRSATAST GKEFGRAAKK 240 LRTS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257522	0.0	KP257522.1 Salvia miltiorrhiza clone 89 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078682.1	1e-101	transcription factor BIM1 isoform X1
Refseq	XP_011078688.1	1e-101	transcription factor BIM1 isoform X2
Swissprot	Q9CAA4	4e-45	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0H3YB53	1e-162	A0A0H3YB53_SALMI; Basic helix-loop-helix transcription factor
STRING	Migut.D01611.1.p	3e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3969	23	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-47	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]