PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008224-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 200aa    MW: 22645.3 Da    PI: 8.2907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008224-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-164386247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           g  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  SMil_00008224-RA_Salv 43 GHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 86
                           667******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.5531836IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-102248IPR009057Homeodomain-like
SuperFamilySSF466895.84E-222295IPR009057Homeodomain-like
PROSITE profilePS5129424.6373791IPR017930Myb domain
SMARTSM007172.3E-144189IPR001005SANT/Myb domain
PfamPF002492.9E-144286IPR001005SANT/Myb domain
CDDcd001675.03E-104687No hitNo description
Gene3DG3DSA:1.10.10.606.2E-204987IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MVVHVQQKSA LKVERTNADR LNRSGKSCRL RWVNYLRPGL KKGHITPQEE GIIIELHALW  60
GNKWSTIARY LPGRTDNEIK NYWRTHFKKR KSASSHESRQ EKQEQEEEAR IDDNKIGKVE  120
DEQGKKVCRS SDQLMLATAH EDCNSTWCWS DFDNCFGLWD MDDQNGCSKM AIHSQPNIAR  180
GGGGGGASGG DAMCSGGYIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-17239040107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593680.0KF059368.1 Salvia miltiorrhiza MYB-related transcription factor (MYB14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099170.19e-56myb-related protein 305
TrEMBLA0A059PRE01e-112A0A059PRE0_SALMI; MYB-related transcription factor
STRINGPGSC0003DMT4000034794e-49(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.14e-45myb domain protein 121