PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008358-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB_related
Protein Properties Length: 82aa    MW: 9239.12 Da    PI: 9.8056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008358-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-081054344
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                           +W+    +++  a +++  +   +W+ Iar +g g+++ +++ ++
  SMil_00008358-RA_Salv 10 SWSSKQNKQFEAALAKFDRDtpdRWHNIARAVGGGKSADEVRRHY 54
                           7*****************99************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.284358IPR017877Myb-like domain
SMARTSM007172.3E-6760IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-11965IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-51064IPR009057Homeodomain-like
CDDcd001670.001571757No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASSSMTSSS WSSKQNKQFE AALAKFDRDT PDRWHNIARA VGGGKSADEV RRHYEALERD  60
ISSIENDQVP IPNYRAARNA RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-25175174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083673.14e-37protein RADIALIS-like 3
SwissprotF4JVB86e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A4D8XUF93e-40A0A4D8XUF9_SALSN; Uncharacterized protein
STRINGMigut.N00487.1.p3e-33(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-27RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]