PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008443-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family SBP
Protein Properties Length: 143aa    MW: 15060.2 Da    PI: 9.1456
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008443-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.77.7e-2469122154
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelse 54 
                            +CqvegC++dls++k y++rhkvC +hsk+p+v+v+gleqrfCqqCsr   + +
  SMil_00008443-RA_Salv  69 RCQVEGCRVDLSDVKAYYSRHKVCGMHSKSPNVIVAGLEQRFCQQCSRCCVFLD 122
                            6***********************************************766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-2463116IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.71767143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-2368124IPR004333Transcription factor, SBP-box
PfamPF031104.0E-1770116IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDKGSSSSSS SSSSAGPDSL NGLKFGKKIY FEGVGSGLQQ PKTGAAPPLP PSPAKKGRTA  60
AVQGAQPPRC QVEGCRVDLS DVKAYYSRHK VCGMHSKSPN VIVAGLEQRF CQQCSRCCVF  120
LDVDWALPLN GAFLFISLSG HVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1470124660squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4378820.0KF437882.1 Salvia miltiorrhiza SQUAMOSA promoter binding protein-like 6 (SPL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078846.15e-45squamosa promoter-binding-like protein 17 isoform X1
RefseqXP_022865346.12e-46squamosa promoter-binding-like protein 14
SwissprotA2X0Q68e-26SPL3_ORYSI; Squamosa promoter-binding-like protein 3
SwissprotA3A2Z88e-26SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBLA0A075FFM33e-75A0A075FFM3_SALMI; SQUAMOSA promoter binding protein-like 6 (Fragment)
STRINGXP_009776998.13e-42(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.19e-26squamosa promoter binding protein-like 15