PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008452-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family G2-like
Protein Properties Length: 256aa    MW: 29224.3 Da    PI: 8.36
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008452-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.3e-31182237156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+ eLH+ Fv+a++qLGG++ AtPk+i+elmkv+gLt+++vkSHLQkYR++
  SMil_00008452-RA_Salv 182 KQRRCWSLELHKIFVDALHQLGGAQTATPKQIRELMKVEGLTNDEVKSHLQKYRIH 237
                            79****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-28179240IPR009057Homeodomain-like
PROSITE profilePS5129412.428179239IPR017930Myb domain
SuperFamilySSF466897.17E-18180240IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24182237IPR006447Myb domain, plants
PfamPF002492.0E-7184235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDENLKAMNF DLGLKNISDI LTEVSGGDDF VKKSSKLDVH VHALEEELKK IEAFKRELPH  60
CMHLLKHAIE RLKAESGREV RPEEFTVLRN DGEDGRVKAS TDLTEKKNWM SSVQLCTPVS  120
RNQDFVFHLR SRFVEGDEFG CKFRNEGGAF LPFKRATAEA EVVSTDLAIP RAKLQQQEQQ  180
KKQRRCWSLE LHKIFVDALH QLGGAQTATP KQIRELMKVE GLTNDEVKSH LQKYRIHIKR  240
VDSTEQLSAH GPLRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13182235255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099213.18e-89myb family transcription factor EFM isoform X1
TrEMBLA0A4D9BX154e-96A0A4D9BX15_SALSN; Uncharacterized protein
STRINGMigut.K00828.1.p3e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84972229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.15e-50G2-like family protein