PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008567-RA_Salv
Common NameMYB5
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family MYB
Protein Properties Length: 219aa    MW: 24400.2 Da    PI: 9.937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008567-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.7e-183277147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           +g+W++eEd++l ++v ++G+++W++I++++  gR++k+c++rw + 
  SMil_00008567-RA_Salv 32 KGPWSAEEDKILTRLVDRYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 77
                           79*****************************9.***********985 PP
2Myb_DNA-binding54.62.5e-1786128347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  SMil_00008567-RA_Salv  86 PFSAAEDDAILAAHHKYGNR-WATIARLLP-GRTDNAVKNHWNST 128
                            79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.832782IPR017930Myb domain
SuperFamilySSF466892.7E-3130125IPR009057Homeodomain-like
SMARTSM007174.3E-163180IPR001005SANT/Myb domain
PfamPF002493.9E-183277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-243385IPR009057Homeodomain-like
CDDcd001671.10E-143476No hitNo description
SMARTSM007171.2E-1583131IPR001005SANT/Myb domain
PROSITE profilePS5129420.21884133IPR017930Myb domain
CDDcd001672.66E-1286129No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2286132IPR009057Homeodomain-like
PfamPF002491.7E-1486128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDLLNRCSSV SSSSSESSSD SSSQRKNGER IKGPWSAEED KILTRLVDRY GPRNWSLISK  60
YIKGRSGKSC RLRWCNQLSP AVEHRPFSAA EDDAILAAHH KYGNRWATIA RLLPGRTDNA  120
VKNHWNSTLK RRYQMQQRRQ GGGDQSLHRG RGESVECDPM TALSLAPPGI GAAAAAAAEE  180
RPSEDLPAGF WDAMRNVIAR EVRDYVTTSF QDTSSGFRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-41291321104MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-412713253158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-412713253158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0593590.0KF059359.1 Salvia miltiorrhiza MYB-related transcription factor (MYB5) mRNA, complete cds.
GenBankKF0594690.0KF059469.1 Salvia miltiorrhiza MYB-related transcription factor (MYB5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083803.11e-100transcription factor MYB44-like
SwissprotO231604e-56MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A059PRQ21e-161A0A059PRQ2_SALMI; MYB-related transcription factor
STRINGXP_004169452.11e-90(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-56myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li C,Lu S
    Genome-wide characterization and comparative analysis of R2R3-MYB transcription factors shows the complexity of MYB-associated regulatory networks in Salvia miltiorrhiza.
    BMC Genomics, 2014. 15: p. 277
    [PMID:24725266]