PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008629-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 185aa    MW: 20106.4 Da    PI: 8.3047
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008629-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235577123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C++ F ++  L  H++ H
  SMil_00008629-RA_Salv 55 FECQHCHRKFANSQALGGHQNAH 77
                           89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-45281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.53E-65282No hitNo description
PROSITE profilePS5015711.8635582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEEHSSSAAY ANASDDDNQD YAPPSPVMKI FGFSVRNDDH APALQQQLDL ESKRFECQHC  60
HRKFANSQAL GGHQNAHKKE RQRAKRAHFV ADHRRLGAAV HLIGPHGARS GSPGGVYGNG  120
LGARFLLPPQ DHQPVVPHVL SGVPLRYPGV ALPHQTRYAS RGEVGPSKPA LVTDVSEGLD  180
VDLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100835.19e-70zinc finger protein 6-like
TrEMBLA0A4D9A8532e-73A0A4D9A853_SALSN; Uncharacterized protein
STRINGMigut.O00779.1.p9e-41(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105631724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.14e-12zinc finger protein 8