PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008650-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family LFY
Protein Properties Length: 392aa    MW: 44146.7 Da    PI: 6.3629
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008650-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY661.31.2e-20113771386
                FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeeldd 88 
                            mdp+afsaslfkwdpra   app+rlle  + +++p+ aa ++  r++ +leelf+ayG+ry+t+akiaelGftv+tL+dm+deeld+
  SMil_00008650-RA_Salv   1 MDPDAFSASLFKWDPRAGL-APPNRLLEAVVPPPPPAPAAYSMRPREMGGLEELFQAYGIRYFTAAKIAELGFTVNTLLDMRDEELDE 87 
                            9**************9877.678899988888888888888889999***************************************** PP

                FLO_LFY  89 lmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaa 176
                            +m+sl++ifr+dllvGeryGikaavraerrrl+ee+  ++rr+lls d ++aldalsqeglseepvq+ekeaagsgg+g   +e+v+a
  SMil_00008650-RA_Salv  88 MMNSLCQIFRWDLLVGERYGIKAAVRAERRRLDEED--ARRRHLLSGDASHALDALSQEGLSEEPVQQEKEAAGSGGGG--VWEMVVA 171
                            **********************************88..99999********************************9999..9999999 PP

                FLO_LFY 177 eekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLl 264
                            + +k+ ++k++    k +  ++ ++++ee++d+e+e  ed+e+ g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+
  SMil_00008650-RA_Salv 172 NGRKQRRRKSSC---KGR-SRMASMEEEEEDDDETEGAEDDENCGGGGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLI 255
                            865443333322...333.3333344556666667777788889999***************************************** PP

                FLO_LFY 265 qvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqg 352
                            qvq+iakerGekcPtkvtnqvfryakkaga+yinkPkmrhYvhCYalhcLdee+snalrrafkergenvGawrqacykplva+aarqg
  SMil_00008650-RA_Salv 256 QVQNIAKERGEKCPTKVTNQVFRYAKKAGANYINKPKMRHYVHCYALHCLDEETSNALRRAFKERGENVGAWRQACYKPLVAVAARQG 343
                            **************************************************************************************** PP

                FLO_LFY 353 wdidavfnahprLsiWYvPtkLrqLChlerskas 386
                            wdida+fnahprLsiWYvPtkLrqLCh+ers+++
  SMil_00008650-RA_Salv 344 WDIDAIFNAHPRLSIWYVPTKLRQLCHAERSTTA 377
                            ******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016988.6E-2091376IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDPDAFSASL FKWDPRAGLA PPNRLLEAVV PPPPPAPAAY SMRPREMGGL EELFQAYGIR  60
YFTAAKIAEL GFTVNTLLDM RDEELDEMMN SLCQIFRWDL LVGERYGIKA AVRAERRRLD  120
EEDARRRHLL SGDASHALDA LSQEGLSEEP VQQEKEAAGS GGGGVWEMVV ANGRKQRRRK  180
SSCKGRSRMA SMEEEEEDDD ETEGAEDDEN CGGGGNERQR EHPFIVTEPG EVARGKKNGL  240
DYLFHLYEQC REFLIQVQNI AKERGEKCPT KVTNQVFRYA KKAGANYINK PKMRHYVHCY  300
ALHCLDEETS NALRRAFKER GENVGAWRQA CYKPLVAVAA RQGWDIDAIF NAHPRLSIWY  360
VPTKLRQLCH AERSTTAASS SITAAGVDHL PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092153882175PROTEIN LEAFY
2vy2_A1e-1092153882175PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175180QRRRKS
Functional Description ? help Back to Top
Source Description
UniProtRequired for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073600.20.0LOW QUALITY PROTEIN: floricaula protein
SwissprotP239150.0FLO_ANTMA; Floricaula protein
TrEMBLA5A4R20.0A5A4R2_PLESU; Floricaula
STRINGMigut.I00669.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-151floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Coen ES, et al.
    floricaula: a homeotic gene required for flower development in antirrhinum majus.
    Cell, 1990. 63(6): p. 1311-22
    [PMID:1702033]