PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008688-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 89aa    MW: 9800.06 Da    PI: 9.8161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008688-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-1014561455
                           HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                           d++N+ +++L   lP+ + ++++kK s a iL+++++YIk+Lq
  SMil_00008688-RA_Salv 14 DELNNLIFKLHASLPHhSNSTSNKKTSAAKILKRTCNYIKKLQ 56
                           689*************666***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.182155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-101468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-51459No hitNo description
PfamPF000109.9E-81456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-101470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSRRARASR LTEDELNNLI FKLHASLPHH SNSTSNKKTS AAKILKRTCN YIKKLQKEVD  60
DLSDGLSQAL ASGDINAADA DTITTFLQL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575301e-149KP257530.1 Salvia miltiorrhiza clone 97 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087225.15e-30transcription factor ILI5-like
TrEMBLA0A0H3YC635e-57A0A0H3YC63_SALMI; Basic helix-loop-helix transcription factor
STRINGVIT_17s0000g05950.t018e-23(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.14e-21bHLH family protein