PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008805-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 207aa    MW: 22933.7 Da    PI: 6.8086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008805-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-1192139455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  SMil_00008805-RA_Salv  92 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 139
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.89E-1086143No hitNo description
SuperFamilySSF474596.8E-1886154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82888138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1888155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-892139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1094144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDPRGVEMMS GGGGGGDVYN FAEIWPRFQM SANAASNEGD SKRMKAVGEL KVEGEGNSGK  60
GAAAVERRSK LDELPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  120
VIGKALVLDE IINYIQSLQR QVEFLSMKLE TVNSRGEIDE YPSKDFAQQT FEAPGLAFGS  180
QSTREYSRGS SPEWLHMQIG SGFDRTS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575340.0KP257534.1 Salvia miltiorrhiza clone 101 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071046.12e-99transcription factor bHLH79-like
SwissprotQ69WS33e-72BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0H3YBV31e-130A0A0H3YBV3_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_002520177.19e-87(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-80BIG PETAL P