PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008823-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family C2H2
Protein Properties Length: 251aa    MW: 28544.6 Da    PI: 9.0167
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008823-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00077123145123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C +C+k F++   L  H  +H
  SMil_00008823-RA_Salv 123 FRCMICNKAFPSYQALGGHRASH 145
                            89***********9999998887 PP
2zf-C2H213.50.00022175197123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++Cp+C+k F++   L  H r+H
  SMil_00008823-RA_Salv 175 HECPICSKIFPSGQALGGHKRSH 197
                            79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.27729IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245729IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-8729No hitNo description
PfamPF139123.3E-5730IPR007087Zinc finger, C2H2
PROSITE patternPS000280929IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-8118145No hitNo description
SMARTSM003550.024123145IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-11123147IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
SuperFamilySSF576673.69E-5172200No hitNo description
PfamPF139121.4E-12174198IPR007087Zinc finger, C2H2
SMARTSM003550.03175197IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39175197IPR007087Zinc finger, C2H2
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDENSKHKCK FCSKMFPCGR SLGGHMRSHL INIEKKEERS SEEAALCTKK RSKRYMNLCP  60
RLSEQEEVAL SLILLSMDNS NNTSFDESNS NSRDPRKRSK INDQSEVNSP KIPPSDDNKK  120
CKFRCMICNK AFPSYQALGG HRASHKKFKG CCAPTTPPSP KPPLNLQECK KAKHHECPIC  180
SKIFPSGQAL GGHKRSHLIT DHHTTDERER RIPQVRDFLD LNLPAPLEED CNDQLKPWWI  240
AATHEPLLGR S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.11e-49zinc finger protein ZAT4-like
TrEMBLA0A4D9C4172e-80A0A4D9C417_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-27C2H2-like zinc finger protein