PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00008919-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family NF-YA
Protein Properties Length: 233aa    MW: 24944.3 Da    PI: 8.1241
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00008919-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA43.11.4e-13134166336
              CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 
                            p+ VNaKQy++I++RR+kRa++e e+kl  k rk
  SMil_00008919-RA_Salv 134 PILVNAKQYNGIMRRRKKRAEAELENKL-LKIRK 166
                            9**************************9.77777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.5E-5130189IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115213.297131166IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-10134166IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTLHTVFFKD GSANAAAQSA VPRWSGLGCQ PPGVYGEGFI QSKGAAACLD GVKDHHGKPH  60
FNLFSGDCKT THENEKTPLQ TASSAALDYL ELGFGQPMIC GAKYPYPDQC YGLYSSYNGP  120
QFAGRMMLPL NGGPILVNAK QYNGIMRRRK KRAEAELENK LLKIRKVTVS APVAAPPREA  180
AASGKRRALP EHQGEGEDDD VEQQPGIGCE QRSGAALSEA SSLPSPLLLQ GLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151RRRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094246.15e-54nuclear transcription factor Y subunit A-10
RefseqXP_020553756.15e-54nuclear transcription factor Y subunit A-10
RefseqXP_020553757.15e-54nuclear transcription factor Y subunit A-10
TrEMBLA0A4D8YEP72e-56A0A4D8YEP7_SALSN; Uncharacterized protein
STRINGMigut.L01823.1.p4e-43(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.29e-12nuclear factor Y, subunit A10