PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009010-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 235aa    MW: 26797.3 Da    PI: 4.9331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009010-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.1e-09124168655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++ r+RR++i  + +eL +l+P       ++++ ae+L+ A +YIk Lq
  SMil_00009010-RA_Salv 124 SIAARQRRRKITVKTQELGKLVPGG-----QRMNTAEMLQSAYNYIKFLQ 168
                            6788*******************96.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.078118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11119174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12120178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.51E-9121172No hitNo description
SMARTSM003532.1E-10124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-6124168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MALSYYSNWT SFQQPDYSGD DPELQSLLNP DDYFADSFCN SLLCDDLTYH ANGLPLELDN  60
LTTATQPPPF LLPHQQPLFH FPKRHKLYDY SLPEFVLPPP LPQFPAADFS CETAKNETSL  120
SAQSIAARQR RRKITVKTQE LGKLVPGGQR MNTAEMLQSA YNYIKFLQAQ VALLEFLGSH  180
HQEVPFEGEE ELQNLLESPL IQEKLYSTQH CLLPNKLAEQ VPLLKSNPHL LEKDH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575370.0KP257537.1 Salvia miltiorrhiza clone 104 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554086.15e-53transcription factor bHLH52
TrEMBLA0A0H3YB601e-171A0A0H3YB60_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.M01923.1.p2e-46(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.15e-18bHLH family protein