PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009072-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 151aa    MW: 17161.4 Da    PI: 7.5754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009072-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-19756255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a++aa++ + g
  SMil_00009072-RA_Salv  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDAAARMMCG 56
                           69******9.**********8.....334**********************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-21666No hitNo description
Gene3DG3DSA:3.30.730.105.1E-33764IPR001471AP2/ERF domain
SMARTSM003804.0E-36770IPR001471AP2/ERF domain
PfamPF008474.3E-12756IPR001471AP2/ERF domain
PROSITE profilePS5103220.956764IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21765IPR016177DNA-binding domain
PRINTSPR003672.2E-11819IPR001471AP2/ERF domain
PRINTSPR003672.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDAA ARMMCGARAR  60
TNFAYDASEP SAKLLSATLM AKLQKCHVTS LKMANKAVKQ SSEAEQQAAR PHDDQNENGM  120
MIKSLEDDQI EQMIQELLDY SSIELSSVMD N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-16863662ATERF1
3gcc_A1e-16863662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022842116.11e-74ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-59ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A4D9BP204e-73A0A4D9BP20_SALSN; Uncharacterized protein
STRINGMigut.I00708.1.p3e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-43ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]