PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009117-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ERF
Protein Properties Length: 207aa    MW: 23125.7 Da    PI: 4.6922
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009117-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-2096146255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrd      k +r++lg+f taeeAa a+++a+++++g
  SMil_00009117-RA_Salv  96 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFETAEEAALAYDKAALRIRG 146
                            8********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.180.109.8E-471106IPR029068Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
CDDcd000181.14E-2895154No hitNo description
PfamPF008478.0E-1596146IPR001471AP2/ERF domain
SMARTSM003809.0E-3896160IPR001471AP2/ERF domain
PROSITE profilePS5103223.69696154IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2396156IPR016177DNA-binding domain
PRINTSPR003672.2E-1197108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-32107155IPR001471AP2/ERF domain
PRINTSPR003672.2E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGVESESSEA ILENVWAKFM AKTGEDDDVS KSWEGLPSLE RDGSMEILER LPSLGRWISM  60
GAEAWEQFLE GSNSTALTAN DCAAKAETAA AAGRKHYRGV RRRPWGKYAA EIRDSSRKGA  120
RVWLGTFETA EEAALAYDKA ALRIRGPKTH LNFPLETAND GADRWKRAAD DGEEPLQKRS  180
RRVDVDHDVL EFEDLGTEYL ESLLYSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2895157466ATERF1
3gcc_A1e-2895157466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096448.11e-79ethylene-responsive transcription factor ERF091
SwissprotO495157e-36ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A4D8YHD93e-96A0A4D8YHD9_SALSN; EREBP-like factor
STRINGXP_008349214.11e-69(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.16e-27ERF family protein