PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009275-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 295aa    MW: 33429.5 Da    PI: 4.569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009275-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.8e-07161209255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            r+ + + +r R  ri  +++ L+el+P++     ++   a+ L  +++YIk+Lq
  SMil_00009275-RA_Salv 161 RERAYATDRIRKLRISRWLDALQELVPSP-----ERGGQAALLDGVIDYIKYLQ 209
                            566778899999****************9.....78899**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.1E-8157215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-10157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-6157209No hitNo description
PROSITE profilePS5088811.503159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-4162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
LEINQAWNME EQDRNEYLQF SPLVMDWIAS NASGSLSNFD SDQHYIKAAG SGPCQWMHCQ  60
PTPQNYVQFL SETGHTEIQK QLSYDVSAQF PTLGLPNPSQ LEEYLRLHNG GDFVTSVTGL  120
EQLGVEEQKL NEEFNHAFET YSQSCAAAYK DPSKLNRKRS RERAYATDRI RKLRISRWLD  180
ALQELVPSPE RGGQAALLDG VIDYIKYLQY QMKDLCRNRL GGGSTSNSVI FLEEHGHYFV  240
QDQMLNGPLE EMIGKLISAY PSAATELLQS RGLIVLPMTF AEELLESTDM LDMQG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575410.0KP257541.1 Salvia miltiorrhiza clone 108 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020550205.11e-114transcription factor bHLH66-like isoform X2
TrEMBLA0A0H3Y7N00.0A0A0H3Y7N0_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.D00274.1.p1e-106(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.16e-19LJRHL1-like 2