PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009454-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 118aa    MW: 13748.8 Da    PI: 9.0506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009454-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.2e-13191011095
                            HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                     B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                            ++ ++r++lp  + +  ++k+e+s   +l++++g +Wevk+  r+ +++ ++l++GW eF++ n  ++ Df+ F+++ + + f+ +v 
  SMil_00009454-RA_Salv  19 AGFKKRVMLPLVYYN--KLKEEKSEWAILKTPKG-EWEVKV--RRDDNGdIFLEDGWPEFARGNAFNDHDFMEFEHTCNkMHFNVNVA 101
                            444567999999985..55566776778777777.7*****..66666669************************9988888866665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.79810104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-1114103IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-918101IPR003340B3 DNA binding domain
CDDcd100175.34E-1018100No hitNo description
SuperFamilySSF1019363.34E-1119100IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MAKDEVAATS KMGKMMVSAG FKKRVMLPLV YYNKLKEEKS EWAILKTPKG EWEVKVRRDD  60
NGDIFLEDGW PEFARGNAFN DHDFMEFEHT CNKMHFNVNV AAKSKHLQRS YLFIATLN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85361630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.13e-09B3 family protein