PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009467-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family bHLH
Protein Properties Length: 402aa    MW: 44605.4 Da    PI: 6.2495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009467-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09214261455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  SMil_00009467-RA_Salv 214 SHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 261
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17208278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-9208265No hitNo description
PROSITE profilePS5088815.624210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17210276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
LVMNSGLPEM LHCLSSTSEN CEMSVLERQR SRLKWQQEQL SQQQPPILPY FNGNDQLSYL  60
GFHGDQDLCE LVVNGGAMKP DPGIENDDFR RFLNYGNGGD LEMSCNLPRT VSCPPNVAAS  120
VDSAAGKESC KKRKADKSHN LKIAAEEKKM KGCAEEESKM TEQNSNSKST TTTISTSANK  180
NSKGMSSANA KKVADAPKTD YIHVRARRGQ ATDSHSLAER VRREKISERM KYLQDLVPGC  240
NKVTGKAGML DEIINYVQSL QRQVEFLSMK LAAINPRLDF DIENYLLKEI FPACAPAVEA  300
SSTGMIDHCH LQFNTPVQGV AGSGLEMAVD PMDATLRRTI SAPVTVPQTF LDPSSLNQIQ  360
HVTWEDELQN LYSMEYQQGR SASFISQQIT GYLEANHVKL EM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575420.0KP257542.1 Salvia miltiorrhiza clone 110 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088410.10.0transcription factor bHLH63 isoform X2
TrEMBLA0A0H3YB620.0A0A0H3YB62_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.B00228.1.p1e-135(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65382330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-60cryptochrome-interacting basic-helix-loop-helix 1