PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00009492-RA_Salv
Organism
Salvia miltiorrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24247.6 Da    PI: 9.4528
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00009492-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.4e-221057249
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           +ie k   qvtfskRr g++KKA+EL++LC++e+ +i+fs+ gk++ +
  SMil_00009492-RA_Salv 10 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIGIIVFSPAGKVFSF 57
                           58888899*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.922161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-28176IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-34160IPR002100Transcription factor, MADS-box
CDDcd002655.00E-36270No hitNo description
PRINTSPR004041.2E-18323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MGRQKIKIQK IEVKNHLQVT FSKRRSGLFK KASELCTLCG VEIGIIVFSP AGKVFSFGHP  60
NVESIIDRYL SRNPAPNAND PFHLMEAQRN ASVRELNQQL GHILNEVEAE RKRGESLDSM  120
RKANQSHYWW ESPINKLGLE ELEQVKEAME ELKKNVNHQA AKLVNASATS LFMANRAGVF  180
DHYETKPTHG VVTSNINNIA AAAAAANGNF GYCHGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14187187MEF2C
5f28_B1e-14187187MEF2C
5f28_C1e-14187187MEF2C
5f28_D1e-14187187MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.11e-119agamous-like MADS-box protein AGL62
TrEMBLA0A4D8YTJ11e-117A0A4D8YTJ1_SALSN; Uncharacterized protein
STRINGMigut.N01504.1.p5e-96(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-56AGAMOUS-like 61